test<-read.table('/Users/zzhang4/Desktop/test.txt')

test<-t(test)
i1<-seq(1,34,2)
i2<-seq(2,34,2)
dset<-cbind(test[i1,1], test[i2,1],test[i1,2], test[i2,2],test[i1,3], test[i2,3])

dset1<-cbind(rbind(dset[,1:2], dset[,3:4],dset[,5:6]), rep(1:3, each=17), rep(c(rep(0,9),rep(1,8)),3))

dset1<-cbind(dset1[,2], dset1[,1]-dset1[,2], dset1[,3:4])
m1<-glm(dset1[, 1:2]~factor(dset1[,3])+dset1[,4], family=binomial("logit"))

data

test.txt